semantic network of drugs

Entity Search: Building Bridges between Two Worlds

We have come to depend on technological resources to create order and find meaning in the ever-growing amount of online data. One frequently recurring type of query in web search are queries containing named entities (persons, organizations, locations, etc.): we organize our environments around entities that are meaningful to us. Hence, to support humans in dealing with massive volumes of data, next generation search engines need to organize information in semantically meaningful ways, structured around entities. Furthermore, instead of merely finding documents that mention an entity, finding the entity itself is required.

The problem of entity search has been and is being looked at by both the Information Retrieval (IR) and Semantic Web (SW) communities and is, in fact, ranked high on the research agendas of the two communities. The entity search task comes in several flavors. One is known as entity ranking (given a query and target category, return a ranked list of relevant entities), another is list completion (given a query and example entities, return similar entities), and a third is related entity finding (given a source entity, a relation and a target type, identify target entities that enjoy the specified relation with the source entity and that satisfy the target type constraint).

State-of-the-art IR models allow us to address entity search by identifying relevant entities in large volumes of web data. These methods often approach entity-oriented retrieval tasks by establishing associations between topics, documents, and entities or amongst entities themselves, where such associations are modeled by observing the language usage around entities. A major challenge with current IR approaches to entity retrieval is that they fail to produce interpretable descriptions of the found entities or of the relationships between entities. The generated models tend to lack human-interpretable semantics and are rarely meaningful for human consumption: interpretable labels are needed (both for entities and for relations). Linked Open Data (LOD) is a recent contribution of the emerging semantic web that has the potential of providing the required semantic information.

From a SW point of view, entity retrieval should be as simple as running SPARQL queries over structured data. However, since a true semantic web still has not been fully realized, the results of such queries are currently not sufficient to answer common information needs. By now, the LOD cloud contains millions of concepts from over one hundred structured data sets. This abundance, however, also introduces novel issues such as “cheap semantics” (e.g. wikilink relations in DBpedia) and the need for ranking potentially very large amounts of results. Furthermore, given the fact that most web users are not proficient users of semantic web languages such as SPARQL or standards such as RDF and OWL, the free-form text input used by most IR systems is more appealing to end users.

These concurrent developments give rise to the following general question: to which extent are state-of-art IR and SW technologies capable of answering information needs related to entity finding? In this paper we focus on the task of related entity finding (REF). E.g., for a source entity (“Michael Schumacher”), a relation (“Michael’s teammates while he was racing in Formula 1”) and a target type (“people”), a REF system should return entities such as “Eddie Irvine” and “Felipe Massa.” REF aims at making arbitrary relations between entities searchable. We focus on an adaptation of the official task as it was run at TREC 2009 and restrict the target entities to those having a primary Wikipedia article: this modification provides an elegant way of making the IR and SW results comparable.

From an IR perspective, a natural way of capturing the relation between a source and target entity is based on their co-occurrence in suitable contexts. Later, we use an aggregate of methods all of which are based on this approach. In contrast, a SW perspective on the same task is to search for entities through links such as the ones in LOD and for this we apply both standard SPARQL queries and an exhaustive graph search algorithm.

In this paper, we analyze and discuss to which extent REF can be solved by IR and SW methods. It is important to note that our goal is not to perform a quantitative comparison, and make claims about one approach being better than the other or vice versa. Rather, we investigate results returned by either approach and perform a more qualitative evaluation. We find that IR and SW methods discover different sets of entities, although these sets are overlapping. Based on the results of our evaluation, we demonstrate that the two approaches are complementary in nature and we discuss how each field could potentially benefit from the other. We arrive at and motivate a proposal to combine text-based entity models with semantic information from the Linking Open Data cloud.

  • [PDF] K. Balog, E. Meij, and M. de Rijke, “Entity search: building bridges between two worlds,” in Proceedings of the 3rd international semantic search workshop, 2010.
    Author = {Balog, Krisztian and Meij, Edgar and de Rijke, Maarten},
    Booktitle = {Proceedings of the 3rd International Semantic Search Workshop},
    Date-Added = {2011-10-20 10:07:31 +0200},
    Date-Modified = {2012-10-30 08:41:54 +0000},
    Series = {SEMSEARCH 2010},
    Title = {Entity search: building bridges between two worlds},
    Year = {2010},
    Bdsk-Url-1 = {}}
Distribution of structured data embedded in XHTML

Investigating the Semantic Gap through Query Log Analysis

Significant efforts have focused in the past years on bringing large amounts of metadata online and the success of these efforts can be seen by the impressive number of web sites exposing data in RDFa or RDF/XML. However, little is known about the extent to which this data fits the needs of ordinary web users with everyday information needs. In this paper we study what we perceive as the semantic gap between the supply of data on the Semantic Web and the needs of web users as expressed in the queries submitted to a major Web search engine. We perform our analysis on both the level of instances and ontologies. First, we first look at how much data is actually relevant to Web queries and what kind of data is it. Second, we provide a generic method to extract the attributes that Web users are searching for regarding particular classes of entities. This method allows to contrast class definitions found in Semantic Web vocabularies with the attributes of objects that users are interested in. Our findings are crucial to measuring the potential of semantic search, but also speak to the state of the Semantic Web in general.

  • [PDF] P. Mika, E. Meij, and H. Zaragoza, “Investigating the semantic gap through query log analysis.,” in Proceedings of the 8th international semantic web conference, 2009.
    Author = {Peter Mika and Edgar Meij and Hugo Zaragoza},
    Booktitle = {Proceedings of the 8th International Semantic Web Conference},
    Date-Added = {2011-10-12 18:31:55 +0200},
    Date-Modified = {2012-10-30 08:45:11 +0000},
    Series = {ISWC 2009},
    Title = {Investigating the Semantic Gap through Query Log Analysis.},
    Year = {2009},
    Bdsk-Url-1 = {}}